Flashcards
Bioinformatics- Genomes
Flashcards do conjunto (27)
- 1Ensembl- 'Evidenced' ProteinsProteins that have been found
- 2Ensembl- Proposed ProteinsProteins suspected, but not yet found
- 3Ensembl- Consensus GenesGenes consisting of the most frequent polymorphisms in all known alleles
- 4Ensembl- GENSCANUsed to create consensus sequences
- 5Ensembl- CCDS TagNCBI, USC, Havana and Ensembl all agree it exists
- 6Ensembl- Data Taken fromNCBI, UniProt, Havana and TrEmbl Reference Sequences
- 7Ensembl- ENSGxxxxxxEnsembl Gene ID
- 8Ensembl- ENSTEnsemble Transcript ID
- 9Ensembl- ENSP/EEnsemble Peptide/Exon ID
- 10Comparisons- Within a single genomeFor gene order, regulatory elements, etc
- 11Comparisons- Comparing GenomesConserved regions, evolutionary links etc
- 12Process TranscriptRNA that won't be transcribed into a protein
- 13Comparing Genomes- Browsers to UseNCBI, Ensembl, UCSC
- 14APIDatabase that uses automatic data extraction by other bioinformatics programmes
- 15DASDatabase that integrates with other databases to keep it up to date
- 16UTRUntranslated Region
- 17Encode ProjectAimed to find every type of functional element in the human genome- completed 2012
- 18Havana (VEGA)Group who manually edit gene data- accurate and flexible but slow and expensive
- 19Ensembl- Red SqSpeciation event
- 20PolymorphisDNA variation that is present in at least 1% of people
- 21SNPChange in single nucleotide
- 22Practical Applications of SNP's- Association StudiesStudies of traits (one of which is known to be genetic) that commonly appear together
- 23Practical Applications of SNP's- Disease DiagnosisSNP's are commonly implicated in genetic diease
- 24Practical Applications of SNP's- Population StudiesUseful in genetic/evolutionary studies
- 25Practical Applications of SNP's- PharmacogeneticsThe tailoring of drugs to the individual
- 26Essential Splice Site SNPIn the first or last two bases of an intron (as this effects splicing)
- 27COSMIC DatabaseDatabase of somatic cancer causing SNP's
Informações
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- Year 2 FlashCards sobre Bioinformatics- Genomes, criado por gina_evans0312 em 28-12-2013.
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- gina_evans0312
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