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5. Innate Immunity

Chloe Cavarretta Immunology Englisch 63 Folien

5. Innate Immunity

Folien in diesem Satz (63)

  1. Learning Outcomes: L6-9

    • Understand the difference between pathogens and commensals
    • Explain what is an antigen
    • Appreciated the differences between the innate and adaptive immune system
    • Summarise the properties of basic cell types of the immune system: Neutrophils, Macrophages, Dendritic Cells, B Lymphocytes, T Lymphocytes
    • Become familiar with structure and function of tissues of the immune system: Lymphatic system, Secondary Lymphoid Tissues (Lymph, Nodes, Spleen), Primary Lymphoid Tissues (Thymus, Bone Marrow)
    • distinctive features and functions of primary and secondary immune organs
    • the topography of embryonic and post-natal haematopoiesis
    • the structure of the thymus
    • the structure and function of the spleen
    • the structure of the lymphatic system
    • the structure of lymph nodes
    • the relationship between structure and function of immune organs
    • characteristic features of immune cells in pathology specimens
  2. Learning Outcomes:

    • the principles underpinning innate immunity
    • the principles of inflammation
    • the mechanism of phagocytosis
    • the basic biology of neutrophils
    • the basic biology of macrophages
    • the basic biology of dendritic cells
    • the basic biology of natural killer cells and other innate lymphoid cells
    • The principles underpinning complement activation and function
    • How innate immune cells sense pathogen
    • The type I interferon cascade and function of IFNb
    • The NFkB cascade and function of selected cytokines
    • How innate immune cells present antigen
    • The significance of negative regulators of innate immunity
  3. What is a...

    • ​​​​​​Pathogen
    • An organism that causes disease: virus, bacteria, fungi, parasite
    • Roles in fermentation, digestion, absorption of nutrients
    • Host/Microbe symbiosis (how they interact)
    • Commensal= one organism benefits, other unaffected
    • Mutalism= both orgainsms benefit
    • Parasitism= one organisms benefit at expense of the other
    • Microbes can be intracellular/extracellular, pathogenic/not- all need to multiply and spread
    • Antigen
    • Molecule capable of inducing an immune response
    • Not always derived from a microbe (cell antigens), not all microbes have antigens(commensal bacteria do't cause immune response)
  4. Mechanisms in Preventing Disease

    • Mucosal barriers (physical barrier)- skin, respiratory tract, intestines
    • Innate immune system- specific but not highly
    • Immediate- what you loose in specificity, gain in speed
    • Recognises foreign pathogens via germ-line encoded receptors (inherited receptors)
    • No memory
    • Adpative immune system- very specific
    • Takes days to develop
    • Highly specific requires rearrangement of receptor genes (not inherited),
    • Generates memory
  5. Mechanisms in Preventing Disease

    • Upon encountering a microbe, a cell tries to:
    • Clear the microbe or inhibit its replication- phagocytosis, interferon system
    • Process the microbe and present to adaptive immune cells
    • Alert and attract other cells that will help clear the infection- upregulation of surface receptors, cytokines, chemokines
    • Kill itself
    • All cells have the potential to perform these activities (to a certain extent), some cells are specifically made and programmed(armed) to do the first 3= innate immune cells
  6. Microbes and the immune system

    • Microbes and the immune system
    • No/short pathology= illness, clearance
    • Acute disease= infection that is failed to clear
    • Chronic disease/prolonged= failure to clear pathogen and failure to stop by immune system
  7. Lymphoid Tissues

    • Lymphoid Tissues
    • Primary and Secondary lymphoid tissue
    • Immune cells develop in primary lymphoid organs (Thymus and Bone Marrow)
    • Lymphocytes differentiate to express antigen receptors: Thymus= T lymphocytes, BM = B lymphocytes
    • ​​​​​​​Immune responses occur in secondary lymphoid tissue (Spleen, LN, Peyer's Patch, Mucosal Associated Lymphoid Tissue (MALT), Gut Associated Lymphoid Tissue (GALT), Nasal Associated Lymphoid Tissue (NALT))
  8. Lymphoid Tissues

    • Rules of Lymphoid Organs:
    • Lymphocytes originate and are initially selected to fit the purpose in the primary lymphoid organs
    • Lymphocytes are ultimately armed in secondary lymphoid organs (where response happens)
    • Such effective, specific armament of lymphocytes takes place when the adaptive immune responses are initiated, e.g. in response to infection
    • The divergent weaponries of lymphocytes, just as those of innate cells, are unleashed in the non-lymphoid target tissues
    • Functional adaptive immunity requires orchestrated interactions of different immune cells in specific microenvironments within primary and secondary lymphoid organs.
    • Functional immunity requires tightly regulated movement of immune cells between immune organs and non-lymphoid target tissues
    • Organized structures of lymphocytes in target tissues and organs are often referred to as tertiary lymphoid organs (TLOs)
  9. Primary Lymphoid Tissue: BM

    • Haematopoeisis- occurs in bone marrow
    • Process of generation of all blood system from HSC
    • Haematopoetic cells develop from a common precursor either a common myeloid progenitor or common lymphoid progenitor
    • Primary Lymphoid Tissue: BM
  10. Primary Lymphoid Tissue: BM

    • Haematopoesis through life
    • Fetal life: occurs in yolk sack- from week 4 of development, liver until shortly before birth, spleen until cartilagenous bone vascularised
    • Adult/infact life: occurs in BM in children, in adults occurs in BM of pelvis, sternum, vertebrate, cranial bones (less in long bones due to fat deposition)
    • Emergency haematopoeisis: in adult life due to chronic inflammation, also occur in spleen, liver or LN (extramedullary haematopoesis)
    • Primary Lymphoid Tissue: BM
    • Bildunterschrift: Potential of different bones to be a source of blood cells during life, some bones maintain ability to host HSCs and some lose it (longer bones)
  11. Primary Lymphoid Tissue: Thymus

    • Educating T cells: Consists of epithelial cells that house train lymphocytes so they don't recognise self-antigens
    • Immature T cells migrate from BM to thymus where they multiple and mature (only 2% of immature T cells achieve proper education to become mature)
    • Reaches its peak size by puberty and decreases after (thymus involution)
  12. Primary Lymphoid Tissue: Thymus

    • Thymus Structure:
    • Capsule= surrounds the 2 lobes holding them together
    • Trabeculae= extensions of capsule into cortex and medulla, establish incomplete thymic lobules where blood vessels and nerves pass
    • Cortex= Outer layer containing immature T cells from BM
    • Medulla= Inner layer mature T cells and Hassals corpuscles (epithelial structures)
    • Thymic evolution: with aging= decrease of size and production of naive T cells, increase in adipose tissue, decrease immune function
    • Primary Lymphoid Tissue: Thymus
  13. Secondary Lymphoid Tissue: Spleen

    • Highly organised structure:
    • Areas rich in immune cells (white pulp)
    • Contains specific lymphoid microenvironments (T and B cell zones)
    • Contains (PALS) periarteriolar lymphoid sheath in T cell zone- Proliferating lymphocytes around central arterioles, which are branches of the splenic artery(connects spleen to rest of body)
    • Areas rich in RBC (red pulp)
    • Filters blood, removed old RBCs and other cells, contains macrophages, carry out extramedullary haematopoesis
    • Directs immune responses to antigens in the blood
    • Hyposplenism= under developed spleen, predisposes to infection
    • Splenomegaly= enlarged spleen, common in chronic inflammatory diseases (malaria)
  14. Secondary Lymphoid Tissue: Lymphatics

    • Drainage system involved in fluid balance: returns to the blood excess interstitial fluid, plasma proteins, tumour cells use this pathway for spreading from its primary site metastasis (due to inc flow)
    • Lymph capillaries: Originate as closed tubes in almost all tissues (except CNS, epidermis and cartilage)
    • Capillary wall is constructed of overlapping endothelial cells that respond to fluid pressure
    • Lymph vessels: Carry lymph and cells from peripheral tissues to draining LNs
    • Lymph:
    • Plasma containing proteins and solutes that filters out of venules+ capillaries due to hydrostatic/oncotic pressure
    • Tissue derived pathogens may be in lymph
    • Cells carried in lymph: lymphocytes, DCs, macrophages, phagocytes
  15. Secondary Lymphoid Tissue: Lymphatics

    • Secondary Lymphoid Tissue: Lymphatics
    • 2 types of lymphatics based on where they are:
    • 1. Superficial Lymphatics: follow superficial veins, connect to primary LNs (axillary, inguinal, cervical), drain into deep lymphatics
    • LNs strategically placed near areas that serve as entry points of infection
    • Symmetrical-2 of each
    • Trunk can be divided into 4 quadrants with different drainage by vertical and horizontal lines through umbilicus
  16. Secondary Lymphoid Tissue: Lymphatics

    • Secondary Lymphoid Tissue: Lymphatics
    • 2. Deep Lymphatics: follow main vessels, connect to LN deeper in organs (oara-aoartic nodes either side of the aorta drain the paired organs, nodes anterior the gut etc (pre-aortic)
    • Thoracic duct- longest lymph vessel connecting upper LN network to lower network:
    • Lymph from 3/4 of body drains into left brachiocephalic vein via thoracic duct
    • Lymph from upper righ quadrant enters to righ brachiocephalic vein
  17. Secondary Lymphoid Tissue: Lymphatics

    • Lymph Nodes
    • Pea sized immune structures strategically placed around the body
    • Central component of host defence: represent meeting place for immune cells and their exposure to antigen
    • Structure of LN:
    • Medulla: contains lymphatic sinuses, plasma cells, B cells, macrophages
    • T cell Paracortex
    • B cell follicles:
    • Primary follicle= mature, naive B cells
    • Secondary follicle= Germinal Center reaction: GCs develop in response to Ag stimulation, site of B cell proliferation, selection, affinity maturation and differentiation (where antigenic responses develop)
  18. Cell Movement to and out of LNs

    • Cell Movement to and out of LNs
    • Flow of fluid is directional
    • Naïve lymphocytes enter via high endothelial venules and exit via efferent(E=EXIT) lymphatics
    • APCs enter via afferent lymphatics(A=arrival), scan for lymphocytes and exit via different lymphatics
  19. Cell Movement to and out of LNs

    • Cell Movement to and out of LNs
    • How B and T cells are separated:
    • Cell movement caused by membrane receptors pulling cell towards areas rich in their ligand= chemotaxis
    • Distinct structural (stroma) cells in LN produce distinct chemokines that attract B or Tcells
    • B cell areas- CXCL13 (ligand of CXCR5 receptor on B cells)
    • T cell areas- CCL21 and CCL19 (ligands of CCR7 receptor on naive T cells and DCs - DCs APCs attracted to same place as T cell
  20. Cell Movement to and out of LNs

    • Chemotaxis: Directed movement of cells or organisms in response to chemicals. The cells are attracted or repelled by substances (chemoattractants), commonly forming gradients
    • Chemokines: chemotactic cytokines (secreted soluble proteins)
  21. Similar Structure of Spleen and LN

    • Similar Structure of Spleen and LN
    • Similarities:
    • Entry and exit points
    • B cell follicles, T cell zones
    • Same ligands
    • Organised in a similar way since this structure is very efficient to optimise immune response
  22. Mucosa Associated Lymphoid Tissue

    • Mucosa Associated Lymphoid Tissue
    • Similar organisation to spleen and LNs
    • Large organised aggregates of lymphoid tissue in digestive, respiratory and genitourinary tracts
    • Peyer's Patch:
    • Organised aggregates of lymphoid cells in ileum
    • Essential for monitoring bacteria populations, preventing growth of pathogenic bacteria in intestine
    • Contain large population of Ab-producing plasma cells (exceeding amount in the spleen, lymph nodes and bone marrow combined)
  23. Pathology- how we study tissues

    • Pathology- how we study tissues
    • Pathology- how we study tissues
  24. Innate Immune System Overview

    • Antigen non-specific:
    • Phagocytic cells (macrophages) detect foreign material and seek to remove
    • Aided by low number of receptors that recognise broad molecular patterns (not present in euk)
    • Macrophages (first line of defence):
    • Induce inflammation through secreting soluble factors (cytokines+chemokines)
    • Phagocytic
    • Found in all peripheral tissue
    • Neutrophils:
    • Most common WBC in blood
    • Migrate rapidly to site of inflammation
    • Phagocytic- ingest and kill bacteria
    • Release toxic granules
  25. Innate Immune System Overview

    • Innate Immune System Overview
  26. Adaptive Immune System Overview

    • Antigen Specific: B and T cells require help from T helper cells to respond
    • B and T cells express antigen-specific receptors, both are highly variable, specficity confined to a single clone
    • Ab on B cells recognise 3D structures and linear peptides
    • T cell receptor (TCR) only recognise linear peptides (ensure dont self attack)
    • Clonal Expansion:
    • Activation of antigen receptor, B and T cells expand, mature and differentiate into highly specialised cell populations
  27. Adaptive Immune System Overview

    • DCs: Interphase of Innate and adaptive immunity
    • Phagocytic
    • Characterised by presence of long dendrite process
    • Main function: activation of adaptive response
    • Actively survey peripheral tissues, once activated migrate to LN to activate antigen specific naive Tcells
    • Lymphatics vessel network:
    • Fluid drainage from peripheral tissues, LNs found at drainage points
    • If destroyed= Surgically induced lymphodema (associated with breast cancer surgery), elephantiasis(induced by parasitic worms that block draining lymphatic)
    • LN= highly organised, B cell follicle- rich in B cells Ab response generated, T cell zone- rich in T cells T cell-DC interactions, T helper response helps make antibodies
  28. Adaptive Immunity Overview

    • Steps of adaptive immune response:
    • Activation of tissue DCs
    • Migration to LN- attracted to same place as T cells due to chemokines
    • Activation of antigen specific T helper cells
    • Activate B cell- antibody producing cell
    • B cell proliferates and produces plasma cells, plasma cell produces Ab
  29. Inflammation

    • Occurs as result of infection/ damage(wound)- aim to clear infection and repair(tissue) damage
    • Characteristics: Redness, swelling, pain
    • A prerequisite for a successful immune response
    • Also a potentially harmful process: Components of inflammation that are capable of destroying microbes can also injury bystander normal tissue (if the response is too strong or too long)
  30. Inflammation

    • Roles of inflammation in combating infection:
    • Deliver effector cells and molecules to site of infection/damage- enhance microbe clearance
    • Blood clotting- form physical barrier and prevent spreading of infection to bloodstream
    • Enhancement of tissue repair process (resolution of inflammation part of process)
    • Three changes to blood vessels during inflammation:
    • Increased diameter- dilate, enhance number of cells and molecules reaching site
    • Increased adhesion molecules that bind leukocytes- sticky around site of damage
    • Increased vascular permeability- allows exit of fluid and proteins into tissue= edema (swelling)
    • Extravasation= Attachment of leukocytes to the endothelium followed by their migration through blood vessels to infected tissue
  31. Innate Immune Cells: Myeloid

    • Innate Immune Cells: Myeloid
    • Myeloid lineage innate immune cells
    • Neutrophils, macrophages, myeloid DCs
    • Derived from common myeloid progenitor (CMP)
    • Others cells from the lymphoid lineage are derived from common lymphoid progenitor (CLP)
  32. Innate Immune Cells: Myeloid

    • Neutrophils: first at the scene
    • Form polymorphonuclear family together with basophil and eosinophils
    • Most abundant WBCs = 40-75%
    • Recruited to site of infection of injury within minutes
    • Predominant cells in pus
    • Short lived, quick acting, motile
    • Kill pathogens in 3 ways: Phagocytosis, Degranulation, Neutrophil extracellular traps (NET)
  33. Phagocytosis

    • Targets (microbes/infected cells) coated in opsonins- protein tag (eg Ab FcR) that enhances phagocytosis
    • Requires membrane rearrangement
    • Steps:
    • Attachment/adhesion and engulfment
    • Phagosome formation- invaginations of membrane
    • Recruitment of lysosomes
    • Phagosome-lysosome fusion
    • Microbe killing due to low pH in phagosome and high conc of: ROS, Defensins (antimicrobial peptides), Hydrolytic enz
    • Phagocytosis
  34. Degranulation + NETs

    • Degranulation
    • Once neutrophil is activated-> secrete toxic granules
    • Release azurophilic (primary) or specific (secondary) granules- contain proteases, defensins, ROS
    • Efficient way of clearing surrounding space in non-highly specific manner
    • Neutrophil Extracellular Traps (NETs)
    • Usually associated with bacterial infections
    • Networks of extracellular fibres primarily composed of DNA and antimicrobial proteins (histones, neutrophil elastase)
    • Creates a sticky environment and traps microbes/pathogens- makes them less motile
    • Kill them through localised high conc of antimicrobial proteins
  35. Innate Immune Cells: Myeloid

    • Macrophages: mature form of monocytes
    • Reside in tissue (monocytes are in circulation): eg Microglia = brain, Kuppfer cells= liver, Osteoclasts= bone
    • Upon infection: tissue-resident macrophages phagocytose microbes, monocytes are recruited to the infected tissue and mature into macrophages
    • Activated through: ​​​​​​​direct interaction with pathogens, factors secreted by T-helper lymphocytes (eg IFNϒ, IL4= cytokines)​​​​​​​
    • Function:
    • ​​​​​​​Highly pathogenic: engulf and destroy pathogens
    • Secrete cytokines that orchestrate inflammatory response
    • Present antigens to T lmyphocytes
    • Contribute to tissue repair and formation of new blood vessels
  36. Innate Immune Cells: Myeloid

    • Myeloid Dendritic Cells: Professional APCs- directly link innate and adaptive
    • Long finger- like projections
    • Immature DCs migrate from bloodstream to tissues or are tissue-resident
    • Phagocytic but not as much as macrophages
    • Scan for presence of potential microbe and become activated (mature) upon encounter
    • During maturation:
    • Become less phagocytic and endocytic
    • Proliferate
    • Process microbial proteins to small peptides and present to T lymphocytes
    • Up-regulate the expression of surface proteins and cytokines for optimal antigen presentation
    • Secrete type I interferons: inhibit pathogen replication, induce apoptosis of nearby infected cells, enhance presentation
    • Migrate to nearest LN through lymphatics system
  37. Innate Immune Cells: Lymphoid

    • Plasmacytoid DCs (pDCs): Subset of DCs derived from CLP that look like plasma cells
    • Rare- less than 0.5% of PBMCs
    • Antigen sensing/recognition similar to myeloid DCs
    • Main function: NOT antigen presentation but production of type I interferons(IFNα and IFNβ), important in antiviral responses
  38. Innate Immune Cells: Lymphoid

    • Innate Lymphoid Cells (ILCs):
    • Newly discovered family of lymphoid cells that translate cytokine signals into effector cytokines w/out expressing antigen specific receptor (produce cytokines to kill a cell)
    • ILCs mirror the phenotypes and functions of T cells:
    • Make similar things upon activation but no antigen receptor (do not directly respond to antigen) and no clonal selection upon stimulation
    • ILCs respond to signals from infected/injured tissues and produce cytokines
    • NK cells -> cytotoxic CD8+ T cells = eg Natural killer cells mirror what CD8+ T cells do
    • ILC1 -> CD4+ T helper 1 (TH1) cells
    • ILC2 -> CD4+ T helper 2 (TH2) cells
    • ILC3 -> CD4+ T helper 17 (TH17) cells
    • Next slide- both innate and adaptive cell mirrors
  39. Mirrors

    • Mirrors
    • CD8 vs NK:
    • CD8 cells characterised by ability to make 3 things: Granzymes, Perforin, IFNϒ
    • NK cells once activated make the same thing but much earlier and less specific
    • ILCs vs T cells
    • ILCs sense signal cytokines eg IL12, IL15, IL33 etc
    • Translate that signal into an effect
    • T cells do this but in a specific and sustained manner
  40. Innate Immune Cells: Lymphoid

    • Natural Killer Cells: Type of ILC
    • Terminally differentiated cell of lymphoid lineage
    • Larger than B and T lymphocytes
    • Characterised by cytoplasmic granules containing cytotoxic proteins (granzyme and perforin) that are secreted to kill infected cells
    • Also secrete type II IFNϒ cytokine and kill infected cells before cytotoxic T lymphocytes
    • Innate Immune Cells: Lymphoid
  41. Innate Immune Cells: Lymphoid

    • NK cells become activated in response to:
    • Type I interferons (IFNα and IFNβ) secreted by other innate (myeloid) cells (macrophages and DCs)
    • Other cytokines produced by an infected tissue (eg IL15)
    • Their cytotoxic activity is controlled through inhibitory and activating receptors on their cell membrane
    • 2 main functions of NK (mechanisms of clearing infected cells):
    • Clearance of 'missing self 'cells
    • Antibody-dependent cellular cytotoxicity
  42. Innate Immune Cells: Lymphoid

    • Missing self :
    • Almost every cell in body expresses MHC-I on surface (immune system recognises 'self')
    • Many pathogens down-regulate MHC-I expression in infected cells- t​​​​​o escape recognition, avoid clearance by cytotoxic T lymphocytes, also common in cancer cells
    • NK cells kill any cells with no/low MHC-I expression (missing-self)
    • Innate Immune Cells: Lymphoid
  43. Innate Immune Cells: Lymphoid

    • NK cells Antibody-Dependent Cellular Cytotoxicity (ADCC):
    • Another way to kill labelled cells
    • NK cells carry receptors for the Fc region of Ab
    • Microbes/ cells coated with these antibodies trigger NKs to release cytotoxic granules,+ increase phagocytosis
    • Innate Immune Cells: Lymphoid
  44. The Complement System

    • A system of soluble pattern-recognition receptors and effector molecules that can detect and destroy microbes
    • 3 main receptors that activate the cascade:
    • C1q(classical pathway)- complement receptor interacts with Ab coated pathogen surface
    • Mannose-binding Lectin (MBL) and ficolins (lectin pathway)- Recognises carbohydrates on pathogen surfaces
    • C3 (alternative pathway)- Undergoes spontaneous hydrolysis leading to deposition of C3 convertase on pathogen surface, spontaneous activation of cascade through accumulation of C3 protein on pathogen surface
  45. The Complement System

    • The complement activation cascade:
    • Circulating proteins react with eachother to fight infection- many are inactive precursor proteases(zymogens)
    • At site of infection:
    • Initiation of complement system through 1 of 3 ways
    • Activates complement enzyme (through proteolytic cleavage of its zymogen
    • Activated enzyme cleaves it substrate (another complement zymogen), activating it
    • Amplification= activation of small number of complement proteins at start of pathway is amplified-> rapid generation of large complement response
    • Has to be strongly regulated to prevent uncontrolled complement activation
  46. Complement Components

    • Complement Components
  47. Function of Complement

    • Complement system helps Ab and phagocytes clear microbes form an organism in 3 ways:
    • Opsonisation- enhancing phagocytosis, complement molecule bound to Ab makes phagocytosis easier
    • Chemotaxis- some complement proteins act as chemoattractants to recruit more phagocytes to site of complement activation
    • Pathogen lysis- complement compounds directly damage bacteria by creating pores in bacterial membrane
    • There is a limited number of complement molecules that can perform all 3 functions
  48. Complement: C3 Convergence Pathway

    • Complement: C3 Convergence Pathway
    • Activation of C3 is key event in complement activation
    • Mediates effector functions, initated by all 3 pathways
  49. Complement: Immune Complex Clearance

    • Complement: Immune Complex Clearance
    • A. Antigen-antibody complex formed in the circulation
    • B. Complement activation-> deposition of C3b on complex
    • C. Complement receptor CR1 on erythrocytes binds immune complex through C3b
    • D. Erythrocytes go to spleen and liver, phagocytosis physically removes immune complex from erythrocyte surface
  50. Pathogen Recognition by Innate Cells

    • Broad Pathogen Associated Molecular Patterns (PAMPs) are recognised by a small number of Pattern Recognition Receptors (PRRs)
    • PRRs are inherited (germline encoded), do not change / adaptive immunity receptors are specific and change
    • PRRs are less specific than adaptive receptors- specific enough to distinguish gram -ve from gram +ve but not gram +ve from gram +ve
  51. Innate vs Adaptive Receptors

    • Innate vs Adaptive Receptors
  52. PAMPs

    • Found on nearly all surfaces of a pathogen class
    • Eg LPS on surface of Gram -ve bacteria
    • Eg dsRNA in dsRNA viruses
    • PAMPs are structures essential for the microbes survival
  53. PRRs

    • A few proteins can be used to sense millions of pathogens
    • All cells express SOME PRRs, DCs and macrophages express ALL PRRs
    • 4 families of PRRs:
    • Toll-like Receptors (TLRs)
    • 10 in humans, cover any type of potential pathogen
    • Localisation on endosome: TLR3, TLR7, mainly dealing with viruses (have to enter cell because obligate parasites)
    • Or localisation on cell membrane: Cell membrane= TLR2 (recognises Gram +ve bacteria- peptidoglycan), TLR4 (recognises Gram -ve bacteria- LPS)
    • ​​​​​​​Nucleotide-binding oligomerisation domain (NOD)- like receptors (NLRs)
    • C-type lectin receptors (CLRs)
    • RIG-1 like receptors (RLRs)
  54. PRRs

    • PRRs
  55. PRR Activation: Kinase Cascade

    • PRR Activation: Kinase Cascade
    • Exposure of cell to PAMP
    • Kinase signalling cascade (with adaptor proteins)
    • Activate TF to translocate to nucleus
    • Targets:
    • Amplifiers
    • Antipathogen molecules/mechanisms
    • Messengers to activate adaptive response
    • Negative regulators to prevent overwhelming activation, eg. ubiquitin ligases ubiquitinate proteins leading to their degradation
  56. Example: TLR4 Activation at Cell Mem

    • Example: TLR4 Activation at Cell Mem
    • TLR4 binds LPS
    • Kinase cascase
    • Activation of 3 transcription families (IRF3, NF-KB, AP-1)
    • Downstream of IR3= transcription of IFN-B (type I interferon)
    • NF-kB and AP-1 pathways lead to production of inflammatory regulators
    • Positive feedback- IFNB activates more cells that express IFNB
    • IFNB also activates second wave of TF (STAT family) that contribute to antipathogen gene expression
  57. TLR4 Activation Depends on Localisation

    • TLR4 only TLR localised on both endosome and membrane
    • MyD88 and TRIF are important adaptor proteins
    • MyD88= early event in activation, essential for any TLR response (except TLR3)
    • TRIF= shared between TLR3 and TLR4 (only TLR4 when in endosome)
    • TLR4 Activation Depends on Localisation
  58. NF-kB Activation Downstream PRRs

    • NF-kB Activation Downstream PRRs
    • Induces transcription of:
    • Chemokines- attract other adaptive and innate immune cells
    • Cytokines- promote inflammation eg IL1B, TNFa, IL6, IL8 (which are induced rapidly/ early)
  59. IRF3 + IRF7 Activation Downstream PRRs

    • Induce transcription of IFNβ and IFNα and ISGs
    • Secreted type I IFNs bind IFNAR (interferon A receptor)= Positive feedback (production of early IFNs)
    • Induces second wave of interferon stimulated genes (ISGs) through the action of other TFs of IRF and STAT
    • IRF3 + IRF7 Activation Downstream PRRs
  60. Function of Type I interferons

    • Functions in immune response:
    • Inhibition of pathogen (virus, parasite) replication through inhibition of protein translation in the infected cell
    • Induction of cell-death (apoptosis) of infected and neighbouring cells
    • Activation of other innate immune cells (eg natural killer cells)
    • Activation of antigen presentation machinery (make DCs and macrophages present antigens to T cells)= initiation of adaptive immunity
  61. Summary: 2 Pathways in Innate Activation

    • The type I interferon pathway
    • Driven by activation of the IRF family TFs
    • Leads to production of IFNβ and other interferon stimulated genes (ISGs)
    • The NF-κB pathway
    • Driven by the activation of the NF-κB TF
    • Leads to the production of cytokines (e.g. IL1b, TNFa, IL6)
    • Transcription of several inflammatory cytokines + surface receptors can be activated downstream by either pathway
  62. Antigen Presentation Machinery

    • Distinct pathways for intracellular and extracellular antigens:
    • Components of both systems (including MHC molecules) are upregulated in response to type I interferons (produced in response to PAMP)
    • MHC-I proteins have cargo (peptide): self peptide or microbial (antigenic) peptide
    • Antigen Presentation Machinery
  63. End of Innate Immune Response

    • Innate immune gene expression programme induces its own negative regulators in later stage:
    • Anti-inflammatory cytokines eg IL10
    • Phosphatases- stop signalling cascade eg dephosphorylation of p38 by DUSPs
    • Intracellular factors: inhibit inflammatory TFs eg lκB (ubiquitin ligase) prevents NFκB from going to the nucleus
    • MicroRNAs: non-coding, suppress translation of inflammatory mRNAs eg suppresion of TRAF6 and IRAK1 by miR-146a
    • Prolonged response can lead to tissue damage and disease caused by immune system:
    • Eg non-cytopathic viruses (hepatitis virus) that establish chronic infection
    • Lead to chronic inflammation, creates long, non-resolving response that will damage liver

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Beschreibung
Block 2 immunology- L6-9
Erstellt von
Chloe Cavarretta
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